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My problem was not about npctypes.
It's 'npcdamageteam' and 'npcdamageteamtype' that's not working.
I won't try messing with damageteam and damageteamtype anymore.
Also, I recorded the video on a planet, not a ship.
The config file is found at the relative path: interface/scripted/NpcMenu/modConfigv2.config. You will see an array called "npcTypeList", from there, you can add the folder/file accordingly and modify that array to include the npctypes you wish.
You can grab a copy and add it to your starbound mod directory here:
https://github.com/ThreeTen22/NpcSpawner/blob/1.2.1/interface/scripted/NpcMenu/modConfigv2.config
You can also make a .patch file as well if you wish, they should work the same way.