I just finished a pure virtual run, and was getting very frustrated by the bad bugs having instant identification and feeling quite unfair, but I got validation that it was broken on my next run (they had it coming). I got identified by the decorative bug in the merging station (the one sitting behind the desk in the little checkpoint). Since he's inside a completely sealed box, I definitely know he wasn't supposed to see me. I have also noticed that the physics on bad bugs will occasionally freak out when...

In the beginning of CRS chapter instead of riding elevator down to engineering, go to front stairs and print a bug, once you control him the elevator with bad bug inside it starts moving without you. Go down to engineering using stairs, once there check on the elevator, it will be closed with bad bug stuck inside. I couldn't find a way to open elevator on any of the levels, that locks out 100% engineering as there will always be 1 agent left, this also locks "They got what they deserved" achievement....

I can't get into the inner circle because bug 0 has glitched through the floor (I guess when a trap went off). If I try to enter bug 0 then I see space briefly then it says I am "disembodied" Is there any way to get a working bug 0 back?

Stuck on the mission where I have to ctrl into a DAD to find "Bug-0" with only 12 ego, lost all my ego earlier from some DADs... Am I softlocked?

I see that there are separate upgrades for increasing canister damage and increasing damage generally. Does anyone know how the math works? Is there a reason why I would pick 2x canister damage over 2x general damage?